Datastructures

Auxiliary datastructures. More...

Classes
class	ChargePair
	Representation of a (putative) link between two Features, which stem from the same compound but have different charge (including different adduct ions (H+, Na+, ..) More...
class	ConstRefVector< ContainerT >::ConstRefVectorConstIterator< ValueT >
	ConstIterator for the ConstRefVector. More...
class	ConstRefVector< ContainerT >::ConstRefVectorIterator< ValueT >
	Mutable iterator for the ConstRefVector. More...
class	ConstRefVector< ContainerT >
	This vector holds pointer to the elements of another container. More...
class	ConvexHull2D
	A 2-dimensional hull representation in [counter]clockwise direction - depending on axis labelling. More...
class	CVMappingRule
	Representation of a CV Mapping rule used by CVMappings. More...
class	CVMappingTerm
	Representation of controlled vocabulary term. More...
class	CVReference
	Controlled Vocabulary Reference. More...
class	DataValue
	Class to hold strings, numeric values, lists of strings and lists of numeric values. More...
class	Date
	Date Class. More...
class	DateTime
	DateTime Class. More...
class	DBoundingBox< D >
	A D-dimensional bounding box. More...
class	DefaultParamHandler
	A base class for all classes handling default parameters. More...
class	DistanceMatrix< Value >
	A two-dimensional distance matrix, similar to OpenMS::Matrix. More...
class	DPosition< D, TCoordinateType >
	Representation of a coordinate in D-dimensional space. More...
class	DRange< D >
	A D-dimensional half-open interval. More...
struct	ListUtils::DoubleTolerancePredicate_
	Predicate to check double equality with a given tolerance. More...
class	ListUtils
	Collection of utility functions for management of vectors. More...
class	Map< Key, T >::IllegalKey
	Map illegal key exception. More...
class	Map< Key, T >
	Map class based on the STL map (containing several convenience functions) More...
class	MassExplainer
	computes empirical formulas for given mass differences using a set of allowed elements More...
class	Matrix< Value >
	A two-dimensional matrix. Similar to std::vector, but uses a binary operator(,) for element access. More...
struct	Param::ParamEntry
	Parameter entry used to store the actual information inside of a Param entry. More...
struct	Param::ParamNode
	Node inside a Param object which is used to build the internal tree. More...
struct	Param::ParamIterator::TraceInfo
	Struct that captures information on entered / left nodes for ParamIterator. More...
class	Param::ParamIterator
	Forward const iterator for the Param class. More...
class	Param
	Management and storage of parameters / INI files. More...
class	QTCluster
	A representation of a QT cluster used for feature grouping. More...
class	SparseVector< Value >::ValueProxy
	class ValueProxy allows the SparseVector to differentiate between writing and reading, so zeros can be ignored See "more effective c++" section 30 More...
class	SparseVector< Value >::SparseVectorIterator
	random access iterator for SparseVector including the hop() function to jump to the next non-sparse element More...
class	SparseVector< Value >::SparseVectorReverseIterator
	random access reverse iterator for SparseVector including the hop() function to jump to the next non-sparse element More...
class	SparseVector< Value >::SparseVectorConstIterator
	const_iterator for SparseVector More...
class	SparseVector< Value >::SparseVectorConstReverseIterator
	const_reverse_iterator for SparseVector More...
class	SparseVector< Value >
	SparseVector implementation. The container will not actually store a specified type of element - the sparse element, e.g. zero (by default) More...
class	String
	A more convenient string class. More...
class	StringListUtils
	Utilities operating on lists of Strings. More...
struct	ToolDescriptionInternal
	ToolDescription Class. More...

Typedefs
typedef std::vector< Int >	IntList
	Vector of signed integers. More...
typedef std::vector< double >	DoubleList
	Vector of double precision real types. More...
typedef std::vector< String >	StringList
	Vector of String. More...

Enumerations
enum	RequirementLevel { MUST = 0, SHOULD = 1, MAY = 2 }
	enum to specify the requirement level More...
enum	CombinationsLogic { OR = 0, AND = 1, XOR = 2 }
	enum to specify the combination operator More...
enum	DataType {   STRING_VALUE, INT_VALUE, DOUBLE_VALUE, STRING_LIST,   INT_LIST, DOUBLE_LIST, EMPTY_VALUE }
	Supported types for DataValue. More...
enum	{ DIMENSION = D }
	Dimensions. More...

Type definitions
enum	{ DIMENSION = D }
	Dimensions. More...
typedef Internal::DIntervalBase< D >	Base
	Base class type. More...
typedef Base::PositionType	PositionType
	Position type. More...
typedef Base::CoordinateType	CoordinateType
	Coordinate type of the positions. More...

Type definitions
enum	{ DIMENSION = D }
	Dimensions. More...
enum	DRangeIntersection { Disjoint, Intersects, Inside }
	Types that describe the kind of intersection between two ranges. More...
typedef Internal::DIntervalBase< D >	Base
	Base class type. More...
typedef Base::PositionType	PositionType
	Position type. More...
typedef Base::CoordinateType	CoordinateType
	Coordinate type of the positions. More...

Type definitions
enum	QuotingMethod { NONE, ESCAPE, DOUBLE }
	How to handle embedded quotes when quoting strings. More...
typedef iterator	Iterator
	Iterator. More...
typedef const_iterator	ConstIterator
	Const Iterator. More...
typedef reverse_iterator	ReverseIterator
	Reverse Iterator. More...
typedef const_reverse_iterator	ConstReverseIterator
	Const reverse Iterator. More...
typedef size_type	SizeType
	UInt type. More...

Detailed Description

Auxiliary datastructures.

Typedef Documentation

typedef Internal::DIntervalBase<D> Base

Base class type.

typedef Internal::DIntervalBase<D> Base

Base class type.

typedef const_iterator ConstIterator

Const Iterator.

typedef const_reverse_iterator ConstReverseIterator

Const reverse Iterator.

typedef Base::CoordinateType CoordinateType

Coordinate type of the positions.

typedef Base::CoordinateType CoordinateType

Coordinate type of the positions.

typedef std::vector<double> DoubleList

Vector of double precision real types.

typedef std::vector<Int> IntList

Vector of signed integers.

typedef iterator Iterator

Iterator.

typedef Base::PositionType PositionType

Position type.

typedef Base::PositionType PositionType

Position type.

typedef reverse_iterator ReverseIterator

Reverse Iterator.

typedef size_type SizeType

UInt type.

typedef std::vector<String> StringList

Vector of String.

Enumeration Type Documentation

anonymous enum

Dimensions.

Enumerator
DIMENSION

anonymous enum

Dimensions.

Enumerator
DIMENSION

anonymous enum

Dimensions.

Enumerator
DIMENSION

enum CombinationsLogic

enum to specify the combination operator

Enumerator
OR
AND
XOR

enum DataType

Supported types for DataValue.

Enumerator
STRING_VALUE	string value
INT_VALUE	integer value
DOUBLE_VALUE	double value
STRING_LIST	string list
INT_LIST	integer list
DOUBLE_LIST	double list
EMPTY_VALUE	empty value

enum DRangeIntersection

Types that describe the kind of intersection between two ranges.

Enumerator
Disjoint	No intersection.
Intersects	Intersection.
Inside	One contains the other.

enum QuotingMethod

How to handle embedded quotes when quoting strings.

Enumerator
NONE
ESCAPE
DOUBLE

enum RequirementLevel

enum to specify the requirement level

Enumerator
MUST
SHOULD
MAY