| mqmplot.cofactors {qtl} | R Documentation |
Plots cofactors as created by mqmsetcofactors
or mqmautocofactors on the genetic map.
mqmplot.cofactors(cross,cofactors, ...)
cross |
An object of class cross. See read.cross for details.
|
cofactors |
List of cofactors to be analysed in the QTL model. To set cofactors use mqmautocofactors or mqmsetcofactors |
... |
Passed to plot.qtl |
Danny Arends danny.arends@gmail.com
MQM - MQM description and references
mqmscan - Main MQM single trait analysis
mqmscanall - Parallellized traits analysis
mqmaugment - Augmentation routine for estimating missing data
mqmautocofactors - Set cofactors using marker density
mqmsetcofactors - Set cofactors at fixed locations
mqmpermutation - Estimate significance levels
scanone - Single QTL scanning
data(multitrait) cof1 <- mqmsetcofactors(multitrait,20) cof2 <- mqmsetcofactors(multitrait,10) op <- par(mfrow=c(2,1)) mqmplot.cofactors(multitrait,cof1,col="blue") mqmplot.cofactors(multitrait,cof2,col="blue") op <- par(mfrow=c(1,1))