Synopsis
#define AMITK_ROI_TYPE (roi)
#define AMITK_ROI_ISOCONTOUR_MIN_VALUE (roi)
#define AMITK_ROI_ISOCONTOUR_MAX_VALUE (roi)
#define AMITK_ROI_ISOCONTOUR_RANGE (roi)
#define AMITK_ROI_VOXEL_SIZE (roi)
#define AMITK_ROI_UNDRAWN (roi)
#define AMITK_ROI_TYPE_ISOCONTOUR (roi)
#define AMITK_ROI_TYPE_FREEHAND (roi)
#define AMITK_ROI_GRANULARITY
enum AmitkRoiType;
enum AmitkRoiIsocontourRange;
struct AmitkRoi;
struct AmitkRoiClass;
AmitkRoi * amitk_roi_new (AmitkRoiType type);
GSList * amitk_roi_get_intersection_line (const AmitkRoi *roi,
const AmitkVolume *canvas_slice,
const amide_real_t pixel_dim);
GSList * amitk_roi_free_points_list (GSList *list);
AmitkDataSet * amitk_roi_get_intersection_slice (const AmitkRoi *roi,
const AmitkVolume *canvas_slice,
const amide_real_t pixel_dim,
const gboolean fill_map_roi);
void amitk_roi_set_voxel_size (AmitkRoi *roi,
AmitkPoint voxel_size);
void amitk_roi_calc_far_corner (AmitkRoi *roi);
void amitk_roi_set_isocontour (AmitkRoi *roi,
AmitkDataSet *ds,
AmitkVoxel start_voxel,
amide_data_t isocontour_min_value,
amide_data_t isocontour_max_value,
AmitkRoiIsocontourRange isocontour_range);
void amitk_roi_manipulate_area (AmitkRoi *roi,
gboolean erase,
AmitkVoxel erase_voxel,
gint area_size);
AmitkPoint amitk_roi_get_center_of_mass (AmitkRoi *roi);
void amitk_roi_set_type (AmitkRoi *roi,
AmitkRoiType new_type);
void amitk_roi_calculate_on_data_set (const AmitkRoi *roi,
const AmitkDataSet *ds,
const guint frame,
const guint gate,
const gboolean inverse,
const gboolean accurate,
void (*calculation) (),
gpointer data);
void amitk_roi_erase_volume (const AmitkRoi *roi,
AmitkDataSet *ds,
const gboolean outside,
AmitkUpdateFunc update_func,
gpointer update_data);
const gchar * amitk_roi_type_get_name (const AmitkRoiType roi_type);
amide_real_t amitk_rois_get_max_min_voxel_size (GList *objects);
Details
AMITK_ROI_TYPE()
#define AMITK_ROI_TYPE(roi) (AMITK_ROI(roi)->type)
AMITK_ROI_ISOCONTOUR_MIN_VALUE()
#define AMITK_ROI_ISOCONTOUR_MIN_VALUE(roi) (AMITK_ROI(roi)->isocontour_min_value)
AMITK_ROI_ISOCONTOUR_MAX_VALUE()
#define AMITK_ROI_ISOCONTOUR_MAX_VALUE(roi) (AMITK_ROI(roi)->isocontour_max_value)
AMITK_ROI_ISOCONTOUR_RANGE()
#define AMITK_ROI_ISOCONTOUR_RANGE(roi) (AMITK_ROI(roi)->isocontour_range)
AMITK_ROI_VOXEL_SIZE()
#define AMITK_ROI_VOXEL_SIZE(roi) (AMITK_ROI(roi)->voxel_size)
AMITK_ROI_UNDRAWN()
#define AMITK_ROI_UNDRAWN(roi) (!AMITK_VOLUME_VALID(roi))
AMITK_ROI_TYPE_ISOCONTOUR()
#define AMITK_ROI_TYPE_ISOCONTOUR(roi)
AMITK_ROI_TYPE_FREEHAND()
#define AMITK_ROI_TYPE_FREEHAND(roi)
AMITK_ROI_GRANULARITY
#define AMITK_ROI_GRANULARITY 4 /* # subvoxels in one dimension, so 1/64 is grain size */
enum AmitkRoiType
typedef enum {
AMITK_ROI_TYPE_ELLIPSOID,
AMITK_ROI_TYPE_CYLINDER,
AMITK_ROI_TYPE_BOX,
AMITK_ROI_TYPE_ISOCONTOUR_2D,
AMITK_ROI_TYPE_ISOCONTOUR_3D,
AMITK_ROI_TYPE_FREEHAND_2D,
AMITK_ROI_TYPE_FREEHAND_3D,
AMITK_ROI_TYPE_NUM
} AmitkRoiType;
enum AmitkRoiIsocontourRange
typedef enum {
AMITK_ROI_ISOCONTOUR_RANGE_ABOVE_MIN,
AMITK_ROI_ISOCONTOUR_RANGE_BELOW_MAX,
AMITK_ROI_ISOCONTOUR_RANGE_BETWEEN_MIN_MAX,
AMITK_ROI_ISOCONTOUR_RANGE_NUM
} AmitkRoiIsocontourRange;
struct AmitkRoi
struct AmitkRoi {
AmitkVolume parent;
AmitkRoiType type;
/* isocontour and freehand specific stuff */
AmitkPoint voxel_size;
AmitkRawData * map_data; /* raw data */
gboolean center_of_mass_calculated;
AmitkPoint center_of_mass;
/* isocontour specific stuff */
amide_data_t isocontour_min_value; /* note, min and max are what were specified for the isocontour */
amide_data_t isocontour_max_value; /* what the user draws may lie outside of this range */
AmitkRoiIsocontourRange isocontour_range;
};
struct AmitkRoiClass
struct AmitkRoiClass {
AmitkVolumeClass parent_class;
void (* roi_changed) (AmitkRoi * roi);
void (* roi_type_changed) (AmitkRoi * roi);
};
amitk_roi_free_points_list ()
GSList * amitk_roi_free_points_list (GSList *list);
amitk_roi_set_voxel_size ()
void amitk_roi_set_voxel_size (AmitkRoi *roi,
AmitkPoint voxel_size);
amitk_roi_calc_far_corner ()
void amitk_roi_calc_far_corner (AmitkRoi *roi);
amitk_roi_type_get_name ()
const gchar * amitk_roi_type_get_name (const AmitkRoiType roi_type);
amitk_rois_get_max_min_voxel_size ()
amide_real_t amitk_rois_get_max_min_voxel_size (GList *objects);
