Synopsis
#define AMITK_DATA_SET_MODALITY (ds)
#define AMITK_DATA_SET_VOXEL_SIZE (ds)
#define AMITK_DATA_SET_VOXEL_SIZE_X (ds)
#define AMITK_DATA_SET_VOXEL_SIZE_Y (ds)
#define AMITK_DATA_SET_VOXEL_SIZE_Z (ds)
#define AMITK_DATA_SET_VOXEL_VOLUME (ds)
#define AMITK_DATA_SET_RAW_DATA (ds)
#define AMITK_DATA_SET_DIM (ds)
#define AMITK_DATA_SET_DIM_X (ds)
#define AMITK_DATA_SET_DIM_Y (ds)
#define AMITK_DATA_SET_DIM_Z (ds)
#define AMITK_DATA_SET_DIM_G (ds)
#define AMITK_DATA_SET_DIM_T (ds)
#define AMITK_DATA_SET_FORMAT (ds)
#define AMITK_DATA_SET_NUM_GATES (ds)
#define AMITK_DATA_SET_NUM_FRAMES (ds)
#define AMITK_DATA_SET_TOTAL_PLANES (ds)
#define AMITK_DATA_SET_DISTRIBUTION (ds)
#define AMITK_DATA_SET_COLOR_TABLE (ds,
view_mode)
#define AMITK_DATA_SET_COLOR_TABLE_INDEPENDENT(ds,
view_mode)
#define AMITK_DATA_SET_INTERPOLATION (ds)
#define AMITK_DATA_SET_DYNAMIC (ds)
#define AMITK_DATA_SET_GATED (ds)
#define AMITK_DATA_SET_THRESHOLDING (ds)
#define AMITK_DATA_SET_THRESHOLD_STYLE (ds)
#define AMITK_DATA_SET_SLICE_PARENT (ds)
#define AMITK_DATA_SET_SCAN_DATE (ds)
#define AMITK_DATA_SET_SUBJECT_NAME (ds)
#define AMITK_DATA_SET_SUBJECT_ID (ds)
#define AMITK_DATA_SET_SUBJECT_DOB (ds)
#define AMITK_DATA_SET_SCAN_START (ds)
#define AMITK_DATA_SET_THRESHOLD_REF_FRAME (ds,
ref_frame)
#define AMITK_DATA_SET_THRESHOLD_MAX (ds,
ref_frame)
#define AMITK_DATA_SET_THRESHOLD_MIN (ds,
ref_frame)
#define AMITK_DATA_SET_SCALING_TYPE (ds)
#define AMITK_DATA_SET_SCALING_HAS_INTERCEPT(ds)
#define AMITK_DATA_SET_SUBJECT_ORIENTATION (ds)
#define AMITK_DATA_SET_CONVERSION (ds)
#define AMITK_DATA_SET_SCALE_FACTOR (ds)
#define AMITK_DATA_SET_INJECTED_DOSE (ds)
#define AMITK_DATA_SET_DISPLAYED_DOSE_UNIT (ds)
#define AMITK_DATA_SET_SUBJECT_WEIGHT (ds)
#define AMITK_DATA_SET_DISPLAYED_WEIGHT_UNIT(ds)
#define AMITK_DATA_SET_CYLINDER_FACTOR (ds)
#define AMITK_DATA_SET_DISPLAYED_CYLINDER_UNIT(ds)
#define AMITK_DATA_SET_THRESHOLD_WINDOW (ds,
i_win,
limit)
#define AMITK_DATA_SET_VIEW_START_GATE (ds)
#define AMITK_DATA_SET_VIEW_END_GATE (ds)
#define AMITK_DATA_SET_NUM_VIEW_GATES (ds)
#define AMITK_DATA_SET_DISTRIBUTION_SIZE
enum AmitkOperation;
enum AmitkInterpolation;
enum AmitkThresholding;
enum AmitkScalingType;
enum AmitkConversion;
enum AmitkWeightUnit;
enum AmitkDoseUnit;
enum AmitkCylinderUnit;
enum AmitkSubjectOrientation;
enum AmitkImportMethod;
enum AmitkExportMethod;
struct AmitkDataSet;
struct AmitkDataSetClass;
AmitkDataSet * amitk_data_set_new (AmitkPreferences *preferences,
const AmitkModality modality);
AmitkDataSet * amitk_data_set_new_with_data (AmitkPreferences *preferences,
const AmitkModality modality,
const AmitkFormat format,
const AmitkVoxel dim,
const AmitkScalingType scaling_type);
AmitkDataSet * amitk_data_set_import_raw_file (const gchar *file_name,
const AmitkRawFormat raw_format,
const AmitkVoxel data_dim,
guint file_offset,
AmitkPreferences *preferences,
const AmitkModality modality,
const gchar *data_set_name,
const AmitkPoint voxel_size,
const amide_data_t scale_factor,
AmitkUpdateFunc update_func,
gpointer update_data);
GList * amitk_data_set_import_file (AmitkImportMethod method,
int submethod,
const gchar *filename,
AmitkPreferences *preferences,
AmitkUpdateFunc update_func,
gpointer update_data);
void amitk_data_set_export_to_file (AmitkDataSet *ds,
const AmitkExportMethod method,
const int submethod,
const gchar *filename,
const gboolean resliced,
const AmitkPoint voxel_size,
const AmitkVolume *bounding_box,
AmitkUpdateFunc update_func,
gpointer update_data);
void amitk_data_sets_export_to_file (GList *data_sets,
const AmitkExportMethod method,
const int submethod,
const gchar *filename,
const AmitkPoint voxel_size,
const AmitkVolume *bounding_box,
AmitkUpdateFunc update_func,
gpointer update_data);
amide_data_t amitk_data_set_get_global_max (AmitkDataSet *ds);
amide_data_t amitk_data_set_get_global_min (AmitkDataSet *ds);
amide_data_t amitk_data_set_get_frame_max (AmitkDataSet *ds,
const guint frame);
amide_data_t amitk_data_set_get_frame_min (AmitkDataSet *ds,
const guint frame);
AmitkColorTable amitk_data_set_get_color_table_to_use
(AmitkDataSet *ds,
const AmitkViewMode view_mode);
void amitk_data_set_set_modality (AmitkDataSet *ds,
const AmitkModality modality);
void amitk_data_set_set_scan_start (AmitkDataSet *ds,
const amide_time_t start);
void amitk_data_set_set_frame_duration (AmitkDataSet *ds,
const guint frame,
amide_time_t duration);
void amitk_data_set_set_voxel_size (AmitkDataSet *ds,
const AmitkPoint voxel_size);
void amitk_data_set_set_thresholding (AmitkDataSet *ds,
const AmitkThresholding thresholding);
void amitk_data_set_set_threshold_style (AmitkDataSet *ds,
const AmitkThresholdStyle threshold_style);
void amitk_data_set_set_threshold_max (AmitkDataSet *ds,
guint which_reference,
amide_data_t value);
void amitk_data_set_set_threshold_min (AmitkDataSet *ds,
guint which_reference,
amide_data_t value);
void amitk_data_set_set_threshold_ref_frame
(AmitkDataSet *ds,
guint which_reference,
guint frame);
void amitk_data_set_set_color_table (AmitkDataSet *ds,
const AmitkViewMode view_mode,
const AmitkColorTable new_color_table);
void amitk_data_set_set_color_table_independent
(AmitkDataSet *ds,
const AmitkViewMode view_mode,
const gboolean independent);
void amitk_data_set_set_interpolation (AmitkDataSet *ds,
const AmitkInterpolation new_interpolation);
void amitk_data_set_set_subject_orientation
(AmitkDataSet *ds,
const AmitkSubjectOrientation subject_orientation);
void amitk_data_set_set_scan_date (AmitkDataSet *ds,
const gchar *new_date);
void amitk_data_set_set_subject_name (AmitkDataSet *ds,
const gchar *new_name);
void amitk_data_set_set_subject_id (AmitkDataSet *ds,
const gchar *new_id);
void amitk_data_set_set_subject_dob (AmitkDataSet *ds,
const gchar *new_dob);
void amitk_data_set_set_conversion (AmitkDataSet *ds,
AmitkConversion new_conversion);
void amitk_data_set_set_scale_factor (AmitkDataSet *ds,
amide_data_t new_scale_factor);
void amitk_data_set_set_injected_dose (AmitkDataSet *ds,
amide_data_t new_injected_dose);
void amitk_data_set_set_subject_weight (AmitkDataSet *ds,
amide_data_t new_subject_weight);
void amitk_data_set_set_cylinder_factor (AmitkDataSet *ds,
amide_data_t new_cylinder_factor);
void amitk_data_set_set_displayed_dose_unit
(AmitkDataSet *ds,
AmitkDoseUnit new_dose_unit);
void amitk_data_set_set_displayed_weight_unit
(AmitkDataSet *ds,
AmitkWeightUnit new_weight_unit);
void amitk_data_set_set_displayed_cylinder_unit
(AmitkDataSet *ds,
AmitkCylinderUnit new_cylinder_unit);
void amitk_data_set_set_threshold_window (AmitkDataSet *ds,
const AmitkWindow window,
const AmitkLimit limit,
const amide_data_t value);
void amitk_data_set_set_view_start_gate (AmitkDataSet *ds,
amide_intpoint_t start_gate);
void amitk_data_set_set_view_end_gate (AmitkDataSet *ds,
amide_intpoint_t end_gate);
amide_time_t amitk_data_set_get_start_time (const AmitkDataSet *ds,
const guint frame);
amide_time_t amitk_data_set_get_end_time (const AmitkDataSet *ds,
const guint frame);
amide_time_t amitk_data_set_get_midpt_time (const AmitkDataSet *ds,
const guint frame);
guint amitk_data_set_get_frame (const AmitkDataSet *ds,
const amide_time_t time);
amide_time_t amitk_data_set_get_frame_duration (const AmitkDataSet *ds,
guint frame);
amide_time_t amitk_data_set_get_min_frame_duration
(const AmitkDataSet *ds);
void amitk_data_set_calc_far_corner (AmitkDataSet *ds);
void amitk_data_set_calc_max_min (AmitkDataSet *ds,
AmitkUpdateFunc update_func,
gpointer update_data);
amide_data_t amitk_data_set_get_max (AmitkDataSet *ds,
const amide_time_t start,
const amide_time_t duration);
amide_data_t amitk_data_set_get_min (AmitkDataSet *ds,
const amide_time_t start,
const amide_time_t duration);
void amitk_data_set_get_thresholding_max_min
(AmitkDataSet *ds,
AmitkDataSet *slice,
const amide_time_t start,
const amide_time_t duration,
amide_data_t *max,
amide_data_t *min);
void amitk_data_set_calc_distribution (AmitkDataSet *ds,
AmitkUpdateFunc update_func,
gpointer update_data);
amide_data_t amitk_data_set_get_internal_value (const AmitkDataSet *ds,
const AmitkVoxel i);
amide_data_t amitk_data_set_get_value (const AmitkDataSet *ds,
const AmitkVoxel i);
amide_data_t amitk_data_set_get_internal_scaling_factor
(const AmitkDataSet *ds,
const AmitkVoxel i);
amide_data_t amitk_data_set_get_scaling_factor (const AmitkDataSet *ds,
const AmitkVoxel i);
amide_data_t amitk_data_set_get_scaling_intercept
(const AmitkDataSet *ds,
const AmitkVoxel i);
void amitk_data_set_set_value (AmitkDataSet *ds,
const AmitkVoxel i,
const amide_data_t value,
const gboolean signal_change);
void amitk_data_set_set_internal_value (AmitkDataSet *ds,
const AmitkVoxel i,
const amide_data_t internal_value,
const gboolean signal_change);
void amitk_data_set_get_projections (AmitkDataSet *ds,
const guint frame,
const guint gate,
AmitkDataSet **projections,
AmitkUpdateFunc update_func,
gpointer update_data);
AmitkDataSet * amitk_data_set_get_cropped (const AmitkDataSet *ds,
const AmitkVoxel start,
const AmitkVoxel end,
const AmitkFormat format,
const AmitkScalingType scaling_type,
AmitkUpdateFunc update_func,
gpointer update_data);
AmitkDataSet * amitk_data_set_get_filtered (const AmitkDataSet *ds,
const AmitkFilter filter_type,
const gint kernel_size,
const amide_real_t fwhm,
AmitkUpdateFunc update_func,
gpointer update_data);
AmitkDataSet * amitk_data_set_get_slice (AmitkDataSet *ds,
const amide_time_t start,
const amide_time_t duration,
const amide_intpoint_t gate,
const AmitkCanvasPoint pixel_size,
const AmitkVolume *slice_volume);
void amitk_data_set_get_line_profile (AmitkDataSet *ds,
const amide_time_t start,
const amide_time_t duration,
const AmitkPoint start_point,
const AmitkPoint end_point,
GPtrArray **preturn_data);
gint amitk_data_sets_count (GList *objects,
gboolean recurse);
amide_time_t amitk_data_sets_get_min_frame_duration
(GList *objects);
amide_real_t amitk_data_sets_get_min_voxel_size (GList *objects);
amide_real_t amitk_data_sets_get_max_min_voxel_size
(GList *objects);
GList * amitk_data_sets_get_slices (GList *objects,
GList **pslice_cache,
const gint max_slice_cache_size,
const amide_time_t start,
const amide_time_t duration,
const amide_intpoint_t gate,
const AmitkCanvasPoint pixel_size,
const AmitkVolume *view_volume);
AmitkDataSet * amitk_data_sets_find_with_slice_parent
(GList *slices,
const AmitkDataSet *slice_parent);
GList * amitk_data_sets_remove_with_slice_parent
(GList *slices,
const AmitkDataSet *slice_parent);
AmitkDataSet * amitk_data_sets_math (AmitkDataSet *ds1,
AmitkDataSet *ds2,
AmitkOperation operation,
gboolean by_frame,
AmitkUpdateFunc update_func,
gpointer update_data);
#define amitk_data_set_get_frame_duration_mem(ds)
#define amitk_data_set_get_frame_max_min_mem(ds)
#define amitk_data_set_dynamic (ds)
const gchar * amitk_scaling_type_get_name (const AmitkScalingType scaling_type);
const gchar * amitk_operation_get_name (const AmitkOperation operation);
const gchar * amitk_interpolation_get_name (const AmitkInterpolation interpolation);
const gchar * amitk_subject_orientation_get_name (const AmitkSubjectOrientation subject_orientation);
const gchar * amitk_thresholding_get_name (const AmitkThresholding thresholding);
const gchar * amitk_threshold_style_get_name (const AmitkThresholdStyle threshold_style);
const gchar * amitk_conversion_get_name (const AmitkConversion conversion);
const gchar * amitk_weight_unit_get_name (const AmitkWeightUnit weight_unit);
const gchar * amitk_dose_unit_get_name (const AmitkDoseUnit dose_unit);
const gchar * amitk_cylinder_unit_get_name (const AmitkCylinderUnit cylinder_unit);
amide_data_t amitk_weight_unit_convert_to (const amide_data_t kg,
const AmitkWeightUnit weight_unit);
amide_data_t amitk_weight_unit_convert_from (const amide_data_t weight,
const AmitkWeightUnit weight_unit);
amide_data_t amitk_dose_unit_convert_to (const amide_data_t MBq,
const AmitkDoseUnit dose_unit);
amide_data_t amitk_dose_unit_convert_from (const amide_data_t dose,
const AmitkDoseUnit dose_unit);
amide_data_t amitk_cylinder_unit_convert_to (const amide_data_t MBq_cc_image_units,
const AmitkCylinderUnit cylinder_unit);
amide_data_t amitk_cylinder_unit_convert_from (const amide_data_t cylinder_factor,
const AmitkCylinderUnit cylinder_unit);
Details
AMITK_DATA_SET_MODALITY()
#define AMITK_DATA_SET_MODALITY(ds) (AMITK_DATA_SET(ds)->modality)
AMITK_DATA_SET_VOXEL_SIZE()
#define AMITK_DATA_SET_VOXEL_SIZE(ds) (AMITK_DATA_SET(ds)->voxel_size)
AMITK_DATA_SET_VOXEL_SIZE_X()
#define AMITK_DATA_SET_VOXEL_SIZE_X(ds) (AMITK_DATA_SET(ds)->voxel_size.x)
AMITK_DATA_SET_VOXEL_SIZE_Y()
#define AMITK_DATA_SET_VOXEL_SIZE_Y(ds) (AMITK_DATA_SET(ds)->voxel_size.y)
AMITK_DATA_SET_VOXEL_SIZE_Z()
#define AMITK_DATA_SET_VOXEL_SIZE_Z(ds) (AMITK_DATA_SET(ds)->voxel_size.z)
AMITK_DATA_SET_VOXEL_VOLUME()
#define AMITK_DATA_SET_VOXEL_VOLUME(ds) (AMITK_DATA_SET(ds)->voxel_size.z*AMITK_DATA_SET(ds)->voxel_size.y*AMITK_DATA_SET(ds)->voxel_size.x)
AMITK_DATA_SET_RAW_DATA()
#define AMITK_DATA_SET_RAW_DATA(ds) (AMITK_DATA_SET(ds)->raw_data)
AMITK_DATA_SET_DIM()
#define AMITK_DATA_SET_DIM(ds) (AMITK_RAW_DATA_DIM(AMITK_DATA_SET_RAW_DATA(ds)))
AMITK_DATA_SET_DIM_X()
#define AMITK_DATA_SET_DIM_X(ds) (AMITK_RAW_DATA_DIM_X(AMITK_DATA_SET_RAW_DATA(ds)))
AMITK_DATA_SET_DIM_Y()
#define AMITK_DATA_SET_DIM_Y(ds) (AMITK_RAW_DATA_DIM_Y(AMITK_DATA_SET_RAW_DATA(ds)))
AMITK_DATA_SET_DIM_Z()
#define AMITK_DATA_SET_DIM_Z(ds) (AMITK_RAW_DATA_DIM_Z(AMITK_DATA_SET_RAW_DATA(ds)))
AMITK_DATA_SET_DIM_G()
#define AMITK_DATA_SET_DIM_G(ds) (AMITK_RAW_DATA_DIM_G(AMITK_DATA_SET_RAW_DATA(ds)))
AMITK_DATA_SET_DIM_T()
#define AMITK_DATA_SET_DIM_T(ds) (AMITK_RAW_DATA_DIM_T(AMITK_DATA_SET_RAW_DATA(ds)))
AMITK_DATA_SET_FORMAT()
#define AMITK_DATA_SET_FORMAT(ds) (AMITK_RAW_DATA_FORMAT(AMITK_DATA_SET_RAW_DATA(ds)))
AMITK_DATA_SET_NUM_GATES()
#define AMITK_DATA_SET_NUM_GATES(ds) (AMITK_DATA_SET_DIM_G(ds))
AMITK_DATA_SET_NUM_FRAMES()
#define AMITK_DATA_SET_NUM_FRAMES(ds) (AMITK_DATA_SET_DIM_T(ds))
AMITK_DATA_SET_TOTAL_PLANES()
#define AMITK_DATA_SET_TOTAL_PLANES(ds) (AMITK_DATA_SET_DIM_Z(ds)*AMITK_DATA_SET_DIM_G(ds)*AMITK_DATA_SET_DIM_T(ds))
AMITK_DATA_SET_DISTRIBUTION()
#define AMITK_DATA_SET_DISTRIBUTION(ds) (AMITK_DATA_SET(ds)->distribution)
AMITK_DATA_SET_COLOR_TABLE()
#define AMITK_DATA_SET_COLOR_TABLE(ds, view_mode) (AMITK_DATA_SET(ds)->color_table[view_mode])
AMITK_DATA_SET_COLOR_TABLE_INDEPENDENT()
#define AMITK_DATA_SET_COLOR_TABLE_INDEPENDENT(ds, view_mode) (AMITK_DATA_SET(ds)->color_table_independent[view_mode])
AMITK_DATA_SET_INTERPOLATION()
#define AMITK_DATA_SET_INTERPOLATION(ds) (AMITK_DATA_SET(ds)->interpolation)
AMITK_DATA_SET_DYNAMIC()
#define AMITK_DATA_SET_DYNAMIC(ds) (AMITK_DATA_SET_NUM_FRAMES(ds) > 1)
AMITK_DATA_SET_GATED()
#define AMITK_DATA_SET_GATED(ds) (AMITK_DATA_SET_NUM_GATES(ds) > 1)
AMITK_DATA_SET_THRESHOLDING()
#define AMITK_DATA_SET_THRESHOLDING(ds) (AMITK_DATA_SET(ds)->thresholding)
AMITK_DATA_SET_THRESHOLD_STYLE()
#define AMITK_DATA_SET_THRESHOLD_STYLE(ds) (AMITK_DATA_SET(ds)->threshold_style)
AMITK_DATA_SET_SLICE_PARENT()
#define AMITK_DATA_SET_SLICE_PARENT(ds) (AMITK_DATA_SET(ds)->slice_parent)
AMITK_DATA_SET_SCAN_DATE()
#define AMITK_DATA_SET_SCAN_DATE(ds) (AMITK_DATA_SET(ds)->scan_date)
AMITK_DATA_SET_SUBJECT_NAME()
#define AMITK_DATA_SET_SUBJECT_NAME(ds) (AMITK_DATA_SET(ds)->subject_name)
AMITK_DATA_SET_SUBJECT_ID()
#define AMITK_DATA_SET_SUBJECT_ID(ds) (AMITK_DATA_SET(ds)->subject_id)
AMITK_DATA_SET_SUBJECT_DOB()
#define AMITK_DATA_SET_SUBJECT_DOB(ds) (AMITK_DATA_SET(ds)->subject_dob)
AMITK_DATA_SET_SCAN_START()
#define AMITK_DATA_SET_SCAN_START(ds) (AMITK_DATA_SET(ds)->scan_start)
AMITK_DATA_SET_THRESHOLD_REF_FRAME()
#define AMITK_DATA_SET_THRESHOLD_REF_FRAME(ds,ref_frame) (AMITK_DATA_SET(ds)->threshold_ref_frame[ref_frame])
AMITK_DATA_SET_THRESHOLD_MAX()
#define AMITK_DATA_SET_THRESHOLD_MAX(ds, ref_frame) (AMITK_DATA_SET(ds)->threshold_max[ref_frame])
AMITK_DATA_SET_THRESHOLD_MIN()
#define AMITK_DATA_SET_THRESHOLD_MIN(ds, ref_frame) (AMITK_DATA_SET(ds)->threshold_min[ref_frame])
AMITK_DATA_SET_SCALING_TYPE()
#define AMITK_DATA_SET_SCALING_TYPE(ds) (AMITK_DATA_SET(ds)->scaling_type)
AMITK_DATA_SET_SCALING_HAS_INTERCEPT()
#define AMITK_DATA_SET_SCALING_HAS_INTERCEPT(ds) ((AMITK_DATA_SET(ds)->scaling_type == AMITK_SCALING_TYPE_0D_WITH_INTERCEPT) || (AMITK_DATA_SET(ds)->scaling_type == AMITK_SCALING_TYPE_1D_WITH_INTERCEPT) || (AMITK_DATA_SET(ds)->scaling_type == AMITK_SCALING_TYPE_2D_WITH_INTERCEPT))
AMITK_DATA_SET_SUBJECT_ORIENTATION()
#define AMITK_DATA_SET_SUBJECT_ORIENTATION(ds) (AMITK_DATA_SET(ds)->subject_orientation)
AMITK_DATA_SET_CONVERSION()
#define AMITK_DATA_SET_CONVERSION(ds) (AMITK_DATA_SET(ds)->conversion)
AMITK_DATA_SET_SCALE_FACTOR()
#define AMITK_DATA_SET_SCALE_FACTOR(ds) (AMITK_DATA_SET(ds)->scale_factor)
AMITK_DATA_SET_INJECTED_DOSE()
#define AMITK_DATA_SET_INJECTED_DOSE(ds) (AMITK_DATA_SET(ds)->injected_dose)
AMITK_DATA_SET_DISPLAYED_DOSE_UNIT()
#define AMITK_DATA_SET_DISPLAYED_DOSE_UNIT(ds) (AMITK_DATA_SET(ds)->displayed_dose_unit)
AMITK_DATA_SET_SUBJECT_WEIGHT()
#define AMITK_DATA_SET_SUBJECT_WEIGHT(ds) (AMITK_DATA_SET(ds)->subject_weight)
AMITK_DATA_SET_DISPLAYED_WEIGHT_UNIT()
#define AMITK_DATA_SET_DISPLAYED_WEIGHT_UNIT(ds) (AMITK_DATA_SET(ds)->displayed_weight_unit)
AMITK_DATA_SET_CYLINDER_FACTOR()
#define AMITK_DATA_SET_CYLINDER_FACTOR(ds) (AMITK_DATA_SET(ds)->cylinder_factor)
AMITK_DATA_SET_DISPLAYED_CYLINDER_UNIT()
#define AMITK_DATA_SET_DISPLAYED_CYLINDER_UNIT(ds) (AMITK_DATA_SET(ds)->displayed_cylinder_unit)
AMITK_DATA_SET_THRESHOLD_WINDOW()
#define AMITK_DATA_SET_THRESHOLD_WINDOW(ds, i_win, limit) (AMITK_DATA_SET(ds)->threshold_window[i_win][limit])
AMITK_DATA_SET_VIEW_START_GATE()
#define AMITK_DATA_SET_VIEW_START_GATE(ds) (AMITK_DATA_SET(ds)->view_start_gate)
AMITK_DATA_SET_VIEW_END_GATE()
#define AMITK_DATA_SET_VIEW_END_GATE(ds) (AMITK_DATA_SET(ds)->view_end_gate)
AMITK_DATA_SET_NUM_VIEW_GATES()
#define AMITK_DATA_SET_NUM_VIEW_GATES(ds) (AMITK_DATA_SET(ds)->num_view_gates)
AMITK_DATA_SET_DISTRIBUTION_SIZE
#define AMITK_DATA_SET_DISTRIBUTION_SIZE 256
enum AmitkOperation
typedef enum {
AMITK_OPERATION_ADD,
AMITK_OPERATION_SUB,
AMITK_OPERATION_NUM
} AmitkOperation;
enum AmitkInterpolation
typedef enum {
AMITK_INTERPOLATION_NEAREST_NEIGHBOR,
AMITK_INTERPOLATION_TRILINEAR,
AMITK_INTERPOLATION_NUM
} AmitkInterpolation;
enum AmitkThresholding
typedef enum {
AMITK_THRESHOLDING_PER_SLICE,
AMITK_THRESHOLDING_PER_FRAME,
AMITK_THRESHOLDING_INTERPOLATE_FRAMES,
AMITK_THRESHOLDING_GLOBAL,
AMITK_THRESHOLDING_NUM
} AmitkThresholding;
enum AmitkScalingType
typedef enum {
AMITK_SCALING_TYPE_0D,
AMITK_SCALING_TYPE_1D,
AMITK_SCALING_TYPE_2D,
AMITK_SCALING_TYPE_0D_WITH_INTERCEPT,
AMITK_SCALING_TYPE_1D_WITH_INTERCEPT,
AMITK_SCALING_TYPE_2D_WITH_INTERCEPT,
AMITK_SCALING_TYPE_NUM
} AmitkScalingType;
enum AmitkConversion
typedef enum {
AMITK_CONVERSION_STRAIGHT,
AMITK_CONVERSION_PERCENT_ID_PER_CC,
AMITK_CONVERSION_SUV,
AMITK_CONVERSION_NUM
} AmitkConversion;
enum AmitkWeightUnit
typedef enum {
AMITK_WEIGHT_UNIT_KILOGRAM,
AMITK_WEIGHT_UNIT_GRAM,
AMITK_WEIGHT_UNIT_POUND,
AMITK_WEIGHT_UNIT_OUNCE,
AMITK_WEIGHT_UNIT_NUM
} AmitkWeightUnit;
enum AmitkDoseUnit
typedef enum {
AMITK_DOSE_UNIT_MEGABECQUEREL,
AMITK_DOSE_UNIT_MILLICURIE,
AMITK_DOSE_UNIT_MICROCURIE,
AMITK_DOSE_UNIT_NANOCURIE,
AMITK_DOSE_UNIT_NUM
} AmitkDoseUnit;
enum AmitkCylinderUnit
typedef enum {
AMITK_CYLINDER_UNIT_MEGABECQUEREL_PER_CC_IMAGE_UNIT,
AMITK_CYLINDER_UNIT_MILLICURIE_PER_CC_IMAGE_UNIT,
AMITK_CYLINDER_UNIT_MICROCURIE_PER_CC_IMAGE_UNIT,
AMITK_CYLINDER_UNIT_NANOCURIE_PER_CC_IMAGE_UNIT,
AMITK_CYLINDER_UNIT_IMAGE_UNIT_CC_PER_MEGABECQUEREL,
AMITK_CYLINDER_UNIT_IMAGE_UNIT_CC_PER_MILLICURIE,
AMITK_CYLINDER_UNIT_IMAGE_UNIT_CC_PER_MICROCURIE,
AMITK_CYLINDER_UNIT_IMAGE_UNIT_CC_PER_NANOCURIE,
AMITK_CYLINDER_UNIT_NUM
} AmitkCylinderUnit;
enum AmitkSubjectOrientation
typedef enum {
AMITK_SUBJECT_ORIENTATION_UNKNOWN,
AMITK_SUBJECT_ORIENTATION_SUPINE_HEADFIRST,
AMITK_SUBJECT_ORIENTATION_SUPINE_FEETFIRST,
AMITK_SUBJECT_ORIENTATION_PRONE_HEADFIRST,
AMITK_SUBJECT_ORIENTATION_PRONE_FEETFIRST,
AMITK_SUBJECT_ORIENTATION_RIGHT_DECUBITUS_HEADFIRST,
AMITK_SUBJECT_ORIENTATION_RIGHT_DECUBITUS_FEETFIRST,
AMITK_SUBJECT_ORIENTATION_LEFT_DECUBITUS_HEADFIRST,
AMITK_SUBJECT_ORIENTATION_LEFT_DECUBITUS_FEETFIRST,
AMITK_SUBJECT_ORIENTATION_NUM
} AmitkSubjectOrientation;
enum AmitkImportMethod
typedef enum { /*< skip >*/
AMITK_IMPORT_METHOD_GUESS,
AMITK_IMPORT_METHOD_RAW,
#ifdef AMIDE_LIBDCMDATA_SUPPORT
AMITK_IMPORT_METHOD_DCMTK,
#endif
#ifdef AMIDE_LIBECAT_SUPPORT
AMITK_IMPORT_METHOD_LIBECAT,
#endif
#ifdef AMIDE_LIBMDC_SUPPORT
AMITK_IMPORT_METHOD_LIBMDC,
#endif
AMITK_IMPORT_METHOD_NUM
} AmitkImportMethod;
enum AmitkExportMethod
typedef enum { /*< skip >*/
AMITK_EXPORT_METHOD_RAW,
#ifdef AMIDE_LIBDCMDATA_SUPPORT
AMITK_EXPORT_METHOD_DCMTK,
#endif
#ifdef AMIDE_LIBMDC_SUPPORT
AMITK_EXPORT_METHOD_LIBMDC,
#endif
AMITK_EXPORT_METHOD_NUM
} AmitkExportMethod;
struct AmitkDataSet
struct AmitkDataSet {
AmitkVolume parent;
/* parameters that are saved */
gchar * scan_date; /* the time/day the image was acquired */
gchar * subject_name; /* name of the subject */
gchar * subject_id; /* id of the subject */
gchar * subject_dob; /* date of birth of the subject */
AmitkModality modality;
AmitkPoint voxel_size; /* in mm */
AmitkRawData * raw_data;
AmitkScalingType scaling_type; /* dimensions of internal scaling */
AmitkRawData * internal_scaling_factor; /* internally (data set) supplied scaling factor */
AmitkRawData * internal_scaling_intercept; /* internally (data set) supplied scaling intercept */
amide_time_t scan_start;
amide_time_t * frame_duration; /* array of the duration of each frame */
AmitkColorTable color_table[AMITK_VIEW_MODE_NUM]; /* the color table to draw this volume in */
gboolean color_table_independent[AMITK_VIEW_MODE_NUM]; /* whether to use the independent color tables for 2-way or 3-way linked modes*/
AmitkInterpolation interpolation;
AmitkSubjectOrientation subject_orientation; /* orientation of subject in scanner */
amide_data_t scale_factor; /* user specified factor to multiply data set by */
AmitkConversion conversion;
amide_data_t injected_dose; /* in MBq */
AmitkDoseUnit displayed_dose_unit;
amide_data_t subject_weight; /* in KG */
AmitkWeightUnit displayed_weight_unit;
amide_data_t cylinder_factor; /* (MBq/cc)/Image Unit */
AmitkCylinderUnit displayed_cylinder_unit;
AmitkThresholding thresholding; /* what sort of thresholding we're using (per slice, global, etc.) */
AmitkThresholdStyle threshold_style; /* min/max or center/width */
amide_data_t threshold_max[2]; /* the thresholds to use for this volume */
amide_data_t threshold_min[2];
guint threshold_ref_frame[2];
amide_data_t threshold_window[AMITK_WINDOW_NUM][AMITK_LIMIT_NUM];
/* which gates we're showing */
amide_intpoint_t view_start_gate;
amide_intpoint_t view_end_gate;
/* parameters calculated as needed or on loading the object */
/* in theory, could be recalculated on the fly, but used enough we'll store... */
AmitkRawData * distribution; /* 1D array of data distribution, used in thresholding */
gboolean max_min_calculated; /* the min/max values can be calculated on demand */
amide_data_t global_max;
amide_data_t global_min;
amide_data_t * frame_max;
amide_data_t * frame_min;
AmitkRawData * current_scaling_factor; /* external_scaling * internal_scaling_factor[] */
amide_intpoint_t num_view_gates;
GList * slice_cache;
gint max_slice_cache_size;
/* only used by derived data sets (slices and projections) */
/* this is a weak pointer, it should be NULL'ed automatically by gtk on the parent's destruction */
AmitkDataSet * slice_parent;
/* misc data items - not saved in .xif file */
gdouble gate_time; /* used by dcmtk_interface.cc for sorting by gate */
gint instance_number; /* used by dcmtk_interface.cc occasionally for sorting */
};
struct AmitkDataSetClass
struct AmitkDataSetClass {
AmitkVolumeClass parent_class;
void (* thresholding_changed) (AmitkDataSet * ds);
void (* threshold_style_changed) (AmitkDataSet * ds);
void (* thresholds_changed) (AmitkDataSet * ds);
void (* windows_changed) (AmitkDataSet * ds);
void (* color_table_changed) (AmitkDataSet * ds,
AmitkViewMode * view_mode);
void (* color_table_independent_changed)(AmitkDataSet * ds,
AmitkViewMode * view_mode);
void (* interpolation_changed) (AmitkDataSet * ds);
void (* subject_orientation_changed) (AmitkDataSet * ds);
void (* conversion_changed) (AmitkDataSet * ds);
void (* scale_factor_changed) (AmitkDataSet * ds);
void (* modality_changed) (AmitkDataSet * ds);
void (* time_changed) (AmitkDataSet * ds);
void (* voxel_size_changed) (AmitkDataSet * ds);
void (* data_set_changed) (AmitkDataSet * ds);
void (* invalidate_slice_cache) (AmitkDataSet * ds);
void (* view_gates_changed) (AmitkDataSet * ds);
};
amitk_data_set_import_raw_file ()
AmitkDataSet * amitk_data_set_import_raw_file (const gchar *file_name,
const AmitkRawFormat raw_format,
const AmitkVoxel data_dim,
guint file_offset,
AmitkPreferences *preferences,
const AmitkModality modality,
const gchar *data_set_name,
const AmitkPoint voxel_size,
const amide_data_t scale_factor,
AmitkUpdateFunc update_func,
gpointer update_data);
amitk_data_set_set_voxel_size ()
void amitk_data_set_set_voxel_size (AmitkDataSet *ds,
const AmitkPoint voxel_size);
amitk_data_set_set_threshold_ref_frame ()
void amitk_data_set_set_threshold_ref_frame
(AmitkDataSet *ds,
guint which_reference,
guint frame);
amitk_data_set_set_color_table_independent ()
void amitk_data_set_set_color_table_independent
(AmitkDataSet *ds,
const AmitkViewMode view_mode,
const gboolean independent);
amitk_data_set_set_scan_date ()
void amitk_data_set_set_scan_date (AmitkDataSet *ds,
const gchar *new_date);
amitk_data_set_set_subject_name ()
void amitk_data_set_set_subject_name (AmitkDataSet *ds,
const gchar *new_name);
amitk_data_set_set_subject_id ()
void amitk_data_set_set_subject_id (AmitkDataSet *ds,
const gchar *new_id);
amitk_data_set_set_subject_dob ()
void amitk_data_set_set_subject_dob (AmitkDataSet *ds,
const gchar *new_dob);
amitk_data_set_set_scale_factor ()
void amitk_data_set_set_scale_factor (AmitkDataSet *ds,
amide_data_t new_scale_factor);
amitk_data_set_set_injected_dose ()
void amitk_data_set_set_injected_dose (AmitkDataSet *ds,
amide_data_t new_injected_dose);
amitk_data_set_set_subject_weight ()
void amitk_data_set_set_subject_weight (AmitkDataSet *ds,
amide_data_t new_subject_weight);
amitk_data_set_set_cylinder_factor ()
void amitk_data_set_set_cylinder_factor (AmitkDataSet *ds,
amide_data_t new_cylinder_factor);
amitk_data_set_set_displayed_dose_unit ()
void amitk_data_set_set_displayed_dose_unit
(AmitkDataSet *ds,
AmitkDoseUnit new_dose_unit);
amitk_data_set_set_displayed_weight_unit ()
void amitk_data_set_set_displayed_weight_unit
(AmitkDataSet *ds,
AmitkWeightUnit new_weight_unit);
amitk_data_set_set_displayed_cylinder_unit ()
void amitk_data_set_set_displayed_cylinder_unit
(AmitkDataSet *ds,
AmitkCylinderUnit new_cylinder_unit);
amitk_data_set_calc_far_corner ()
void amitk_data_set_calc_far_corner (AmitkDataSet *ds);
amitk_data_sets_count ()
gint amitk_data_sets_count (GList *objects,
gboolean recurse);
amitk_data_sets_get_min_frame_duration ()
amide_time_t amitk_data_sets_get_min_frame_duration
(GList *objects);
amitk_data_sets_get_min_voxel_size ()
amide_real_t amitk_data_sets_get_min_voxel_size (GList *objects);
amitk_data_sets_get_max_min_voxel_size ()
amide_real_t amitk_data_sets_get_max_min_voxel_size
(GList *objects);
amitk_data_sets_find_with_slice_parent ()
AmitkDataSet * amitk_data_sets_find_with_slice_parent
(GList *slices,
const AmitkDataSet *slice_parent);
amitk_data_sets_remove_with_slice_parent ()
GList * amitk_data_sets_remove_with_slice_parent
(GList *slices,
const AmitkDataSet *slice_parent);
amitk_data_set_get_frame_duration_mem()
#define amitk_data_set_get_frame_duration_mem(ds) (g_try_new0(amide_time_t,(ds)->raw_data->dim.t))
amitk_data_set_get_frame_max_min_mem()
#define amitk_data_set_get_frame_max_min_mem(ds) (g_try_new0(amide_data_t,(ds)->raw_data->dim.t))
amitk_data_set_dynamic()
#define amitk_data_set_dynamic(ds) ((ds)->data_set->dim.t > 1)
amitk_scaling_type_get_name ()
const gchar * amitk_scaling_type_get_name (const AmitkScalingType scaling_type);
amitk_operation_get_name ()
const gchar * amitk_operation_get_name (const AmitkOperation operation);
amitk_interpolation_get_name ()
const gchar * amitk_interpolation_get_name (const AmitkInterpolation interpolation);
amitk_thresholding_get_name ()
const gchar * amitk_thresholding_get_name (const AmitkThresholding thresholding);
amitk_threshold_style_get_name ()
const gchar * amitk_threshold_style_get_name (const AmitkThresholdStyle threshold_style);
amitk_conversion_get_name ()
const gchar * amitk_conversion_get_name (const AmitkConversion conversion);
amitk_weight_unit_get_name ()
const gchar * amitk_weight_unit_get_name (const AmitkWeightUnit weight_unit);
amitk_dose_unit_get_name ()
const gchar * amitk_dose_unit_get_name (const AmitkDoseUnit dose_unit);
amitk_cylinder_unit_get_name ()
const gchar * amitk_cylinder_unit_get_name (const AmitkCylinderUnit cylinder_unit);
