org.jmol.jvxl.readers
Class PolygonFileReader

java.lang.Object
  org.jmol.jvxl.readers.SurfaceReader
      org.jmol.jvxl.readers.SurfaceFileReader
          org.jmol.jvxl.readers.PolygonFileReader

All Implemented Interfaces:

VertexDataServer

Direct Known Subclasses:

EfvetReader, ObjReader, PmeshReader

abstract class PolygonFileReader
extends SurfaceFileReader

Field Summary

protected int	nTriangles
protected int	nVertices

Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader

binarydoc, br, line, next

Fields inherited from class org.jmol.jvxl.readers.SurfaceReader

ANGSTROMS_PER_BOHR, cJvxlEdgeNaN, colorEncoder, colorFractionBase, colorFractionRange, contourVertexCount, defaultCutoff, defaultMappedDataMax, defaultMappedDataMin, edgeFractionBase, edgeFractionRange, fractionData, hasColorData, isApbsDx, isJvxl, isProgressive, isXLowToHigh, jvxlColorDataRead, jvxlCutoff, jvxlData, jvxlDataIs2dContour, jvxlDataIsColorMapped, jvxlDataIsPrecisionColor, jvxlEdgeDataRead, jvxlFileHeaderBuffer, jvxlNSurfaceInts, jvxlVoxelBitSet, marchingSquares, meshData, meshDataServer, nBytes, nDataPoints, nPointsX, nPointsY, nPointsZ, params, ptTemp, sg, vContours, vertexDataOnly, volumeData, volumetricOrigin, volumetricVectors, voxelCounts, voxelData

Constructor Summary

PolygonFileReader(SurfaceGenerator sg, java.io.BufferedReader br)

Method Summary

(package private) void	discardTempData(boolean discardAll)
(package private) abstract void	getSurfaceData()
protected void	readSurfaceData(boolean isMapData)
(package private) boolean	readVolumeData(boolean isMapData)
(package private) boolean	readVolumeParameters()

Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader

determineFileType, getTokens, parseFloat, parseFloat, parseInt, parseInt, parseIntNext, skipTo

Methods inherited from class org.jmol.jvxl.readers.SurfaceReader

addTriangleCheck, addVertexCopy, applyColorScale, colorIsosurface, createIsosurface, excludeMaximumSet, excludeMinimumSet, getArgbFromPalette, getColorIndexFromPalette, getColorPhaseIndex, getMaxMappedValue, getMinMappedValue, getSurfacePointAndFraction, getSurfacePointIndexAndFraction, getValue, gotoAndReadVoxelData, gotoData, initializeVolumetricData, jvxlUpdateInfo, readColorData, resetIsosurface, selectPocket, setVolumeData, updateSurfaceData, updateTriangles

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

nVertices

protected int nVertices

nTriangles

protected int nTriangles

Constructor Detail

PolygonFileReader

PolygonFileReader(SurfaceGenerator sg,
                  java.io.BufferedReader br)

Method Detail

discardTempData

void discardTempData(boolean discardAll)

Overrides:

discardTempData in class SurfaceFileReader

readVolumeParameters

boolean readVolumeParameters()

Specified by:

readVolumeParameters in class SurfaceReader

readVolumeData

boolean readVolumeData(boolean isMapData)

Specified by:

readVolumeData in class SurfaceReader

readSurfaceData

protected void readSurfaceData(boolean isMapData)
                        throws java.lang.Exception

Specified by:

readSurfaceData in class SurfaceReader

Throws:

java.lang.Exception

getSurfaceData

abstract void getSurfaceData()
                      throws java.lang.Exception

Throws:

java.lang.Exception